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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
29/01/2020 |
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Actualizado : |
29/01/2020 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
CARVALHO, F.E.; ESPIGOLAN, R.; BERTON, M.P.; NETO, J.B.S.; SILVA, R.P.; GRIGOLETTO, L.; SILVA, R.M.O.; FERRAZ, J.B.S.; ELER, J.P.; AGUILAR, I.; LÔBO, R.B.; BALDI, F. |
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Afiliación : |
F.E.CARVALHO, Departament of Veterinary Medicine, College of Animal Science and Food Engineer, University of São Paulo (USP), Pirassununga/SP, Brazil; R. ESPIGOLAN, Departament of Veterinary Medicine, College of Animal Science and Food Engineer, University of São Paulo (USP), Pirassununga/SP, Brazil; M. P. BERTON, Departament of Animal Science, College of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal/SP, Brazil; J. B. S. NETO, Departament of Animal Science, College of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal/SP, Brazil; R. P. SILVA, Departament of Veterinary Medicine, College of Animal Science and Food Engineer, University of São Paulo (USP), Pirassununga/SP, Brazil; L. GRIGOLETTO, Departament of Veterinary Medicine, College of Animal Science and Food Engineer, University of São Paulo (USP), Pirassununga/SP, Brazil; R. M. O. SILVA, Zoetis, 1240 Dr. Chucri Zaidan Street, Edifício Morumbi Corporate, Diamond Tower, 4th floor, São Paulo, SP, Brazil; J. B. S. FERRAZ, Departament of Veterinary Medicine, College of Animal Science and Food Engineer, University of São Paulo (USP), Pirassununga/SP, Brazil; J. P . ELER, Departament of Veterinary Medicine, College of Animal Science and Food Engineer, University of São Paulo (USP), Pirassununga/SP, Brazil; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; LÔBO, R.B., Nacional Association of Breeders and Researchers (ANCP), Ribeirão Preto, SP, Brazil; F. BALDI, Departament of Animal Science, College of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal/SP, Brazil. |
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Título : |
Genome-wide association study and predictive ability for growth traits in Nellore cattle. |
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Fecha de publicación : |
2020 |
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Fuente / Imprenta : |
Livestock Science, January 2020, Volume 231, Article number 103861. OPEN ACCESS. Doi: https://doi.org/10.1016/j.livsci.2019.103861 |
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ISSN : |
1871-1413 |
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DOI : |
10.1016/j.livsci.2019.103861 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received 25 June 2019 / Revised 29 October 2019 / Accepted 4 November 2019 / Available online 6 November 2019.
Funding information: F.E. CARVALHO received a scholarship from Coordinating for the Improvement of Higher Education Personnel (CAPES) in conjunction with the Postgraduate Program on Zootecnia, Universidade de São Paulo, Faculdade de Zootecnia e Engenharia de Alimentos (FZEA, USP). To National Association of Breeders and Researchers (ANCP, Ribeirão Preto-SP, Brazil). To Fapesp, ( Sao Paulo Research Foundation , grants #2016/222751-6 #2017/10493-5 ). F.B held productivity research fellowships from The Brazilian National Council for Scientific and Technological Development (CNPQ). |
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Contenido : |
ABSTRACT.
This study aimed to identify genomic regions influencing growth traits in Nellore cattle and evaluate the predictive ability of each trait based on results obtained from single-step genome-wide association analyzes (ssGWAS) considering different single nucleotide polymorphims (SNP) densities of markers. The National Association of Breeders and Researchers provided the dataset, from eighteen Nellore herds participating of the Nellore Brazilian breeding program. The traits birth weight (BW), adjusted weight at 210 (W210) and at 450 (W450) days of age and adult cow weight (ACW) were considered. A total of 963 animals, genotyped using the Illumina BovineHD BeadChip, were used as a reference population to impute genotypes of 7,689 animals, genotyped in low-density panel. Genotype imputation was performed using the FImpute 2.2 software. The ssGWAS was used to identify genomic regions associated to growth traits. Several genes in enrichment analysis were related to muscle and adipose tissue development and metabolism, feed efficiency, milk composition and maternal behavior. The predictive ability varied from low (0.10) to moderate (0.68). The predictive ability and bias for both panels were similar for all traits. The results found in this study should improve the understanding of genetic and physiologic mechanism associated with growth traits. However, the association of these results with other approaches, like system biologic and other omics information should improve the identification of causative genetic variants in growth traits in indicine cattle.
© 2019 Elsevier B.V. MenosABSTRACT.
This study aimed to identify genomic regions influencing growth traits in Nellore cattle and evaluate the predictive ability of each trait based on results obtained from single-step genome-wide association analyzes (ssGWAS) considering different single nucleotide polymorphims (SNP) densities of markers. The National Association of Breeders and Researchers provided the dataset, from eighteen Nellore herds participating of the Nellore Brazilian breeding program. The traits birth weight (BW), adjusted weight at 210 (W210) and at 450 (W450) days of age and adult cow weight (ACW) were considered. A total of 963 animals, genotyped using the Illumina BovineHD BeadChip, were used as a reference population to impute genotypes of 7,689 animals, genotyped in low-density panel. Genotype imputation was performed using the FImpute 2.2 software. The ssGWAS was used to identify genomic regions associated to growth traits. Several genes in enrichment analysis were related to muscle and adipose tissue development and metabolism, feed efficiency, milk composition and maternal behavior. The predictive ability varied from low (0.10) to moderate (0.68). The predictive ability and bias for both panels were similar for all traits. The results found in this study should improve the understanding of genetic and physiologic mechanism associated with growth traits. However, the association of these results with other approaches, like system biologic and other omics information should improve ... Presentar Todo |
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Palabras claves : |
BEEF CATTLE; Genomic; Predictive ability; Single nucleotide polymosphism. |
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Asunto categoría : |
L10 Genética y mejoramiento animal |
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URL : |
https://www.sciencedirect.com/science/article/pii/S1871141319308935/pdfft?md5=2a644d20a870893fa10662e7fb7ecf40&pid=1-s2.0-S1871141319308935-main.pdf
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Marc : |
LEADER 03332naa a2200337 a 4500
001 1060718
005 2020-01-29
008 2020 bl uuuu u00u1 u #d
022 $a1871-1413
024 7 $a10.1016/j.livsci.2019.103861$2DOI
100 1 $aCARVALHO, F.E.
245 $aGenome-wide association study and predictive ability for growth traits in Nellore cattle.$h[electronic resource]
260 $c2020
500 $aArticle history: Received 25 June 2019 / Revised 29 October 2019 / Accepted 4 November 2019 / Available online 6 November 2019. Funding information: F.E. CARVALHO received a scholarship from Coordinating for the Improvement of Higher Education Personnel (CAPES) in conjunction with the Postgraduate Program on Zootecnia, Universidade de São Paulo, Faculdade de Zootecnia e Engenharia de Alimentos (FZEA, USP). To National Association of Breeders and Researchers (ANCP, Ribeirão Preto-SP, Brazil). To Fapesp, ( Sao Paulo Research Foundation , grants #2016/222751-6 #2017/10493-5 ). F.B held productivity research fellowships from The Brazilian National Council for Scientific and Technological Development (CNPQ).
520 $aABSTRACT. This study aimed to identify genomic regions influencing growth traits in Nellore cattle and evaluate the predictive ability of each trait based on results obtained from single-step genome-wide association analyzes (ssGWAS) considering different single nucleotide polymorphims (SNP) densities of markers. The National Association of Breeders and Researchers provided the dataset, from eighteen Nellore herds participating of the Nellore Brazilian breeding program. The traits birth weight (BW), adjusted weight at 210 (W210) and at 450 (W450) days of age and adult cow weight (ACW) were considered. A total of 963 animals, genotyped using the Illumina BovineHD BeadChip, were used as a reference population to impute genotypes of 7,689 animals, genotyped in low-density panel. Genotype imputation was performed using the FImpute 2.2 software. The ssGWAS was used to identify genomic regions associated to growth traits. Several genes in enrichment analysis were related to muscle and adipose tissue development and metabolism, feed efficiency, milk composition and maternal behavior. The predictive ability varied from low (0.10) to moderate (0.68). The predictive ability and bias for both panels were similar for all traits. The results found in this study should improve the understanding of genetic and physiologic mechanism associated with growth traits. However, the association of these results with other approaches, like system biologic and other omics information should improve the identification of causative genetic variants in growth traits in indicine cattle. © 2019 Elsevier B.V.
653 $aBEEF CATTLE
653 $aGenomic
653 $aPredictive ability
653 $aSingle nucleotide polymosphism
700 1 $aESPIGOLAN, R.
700 1 $aBERTON, M.P.
700 1 $aNETO, J.B.S.
700 1 $aSILVA, R.P.
700 1 $aGRIGOLETTO, L.
700 1 $aSILVA, R.M.O.
700 1 $aFERRAZ, J.B.S.
700 1 $aELER, J.P.
700 1 $aAGUILAR, I.
700 1 $aLÔBO, R.B.
700 1 $aBALDI, F.
773 $tLivestock Science, January 2020, Volume 231, Article number 103861. OPEN ACCESS. Doi: https://doi.org/10.1016/j.livsci.2019.103861
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| 41. |  | FERREIRA, V.; PIANZZOLA, M.J.; VILARÓ, F.; GALVÁN, G.; TONDO, M.L.; RODRÍGUEZ, M.V.; ORELLANO, E.G.; VALSS, M.; SIRI, M.I. Interspecific potato breeding lines display differential colonization patterns and induced defense responses after Ralstonia solanacearum infection. Frontiers in Plant Science, 28 August 2017, volume 8, 1424. OPEN ACCESS. Article history: Received: 30 June 2017 / Accepted: 02 August 2017 / Published: 28 August 2017.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
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| 42. | | LÓPEZ RODRÍGUEZ, M.; ARCIA, P.; PÉREZ DE VIDA, F.; TRESSO, G.; FIGUEREDO, V.; LUZARDO, C.; GONNET, D.; URAGA, R.; SANGUINETTI, M.N.; BILLIRIS, A. Red tecnológica de arroz: grupos de calidad del arroz uruguayo. In: Terra, J. A.; Martínez, S.; Saravia, H.; Mesones, B.; Álvarez, O. (Eds.) Arroz 2020. Montevideo (UY): INIA, 2020. p. 113-116. (INIA Serie Técnica; 257)| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Treinta y Tres. |
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| 43. | | LÓPEZ RODRÍGUEZ, M.; ARCIA, P.; PÉREZ DE VIDA, F.; TRESSO, G.; FIGUEREDO, V.; LUZARDO, C.; GONNET, D.; URAGA, R.; SANGUINETTI, M.N.; BILLIRIS, A. Pautas y criterios para el manejo industrial de numerosas variedades: aspectos de calidad física y sensorial. In: Terra, J. A.; Martínez, S.; Saravia, H.; Mesones, B.; Álvarez, O. (Eds.) Arroz 2020. Montevideo (UY): INIA, 2020. p. 117-120. (INIA Serie Técnica; 257)| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Treinta y Tres. |
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| 44. | | DEL CAMPO, M.; BRITO, G.; RODRÍGUEZ ALMADA,, H.; NEGREIRA, C.; CORTELA, G.; RODRÍGUEZ, M.N.; GARAGORRY, F.; ECHENIQUE, M.; CENTURIÓN, D.; URBINA, S.; ZAMIT, V.; SOARES DE LIMA, J.M. Caracterización de hematomas de edad conocida en bovinos de carne a través de innovadoras técnicas forenses. [abstract]. In: AUPA, Proceedings del VII Congreso Uruguayo de Producción Animal. Sección Una Sola Salud (Single Health Section), 14 y 15 diciembre 2021. Archivos Latinoamericanos de Producción Animal, 29(Supl.1), p.98. Corresponding author: M. del Campo, Instituto Nacional de Investigación Agropecuaria (INIA), mailto: mdelcampo@inia.org.uy| Tipo: Abstracts/Resúmenes |
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| 45. | | ARGÜELLES, C.F.; PERCUOCO, C.B.; TALAVERA-STEFANI, L.N.; GONZÁLEZ, N.L.; CARDOZO, A.E.; SOROL, C.B.; CRIVELLO, J.F.; DE BATTISTA, G.A.; RODRIGUEZ, M.E. Calophyllum Brasiliense un recurso nativo de interés en selvas ribereñas. In: INIA TACUAREMBÓ; BENNADJI, Z. (Coord.). Domesticación y diversificación de especies forestales de alto valor: avances y perspectivas. JORNADA TÉCNICA, 27 DE ABRIL, TACUAREMBÓ, URUGUAY, 2017. Tacuarembó (Uruguay): INIA , 2017. p. 8 (INIA Serie Actividades de Difusión ; 774)| Biblioteca(s): INIA Tacuarembó. |
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| 46. | | PEREYRA, S.; CASTRO, M.; VERO, S.; SILVA, P.; CAL, A.; TISCORNIA, G.; GONZALEZ, N.; BENTOS, D.; ALVAREZ, W.; RABAZA, S.; SEVILLANO, L.; BRANCATTI, G.; FRANCIA, C.; RAFFO, M.A.; GERMAN, S.; PÉREZ, C.; GARMENDIA, G.; PAREJA, L.; RODRÍGUEZ, A.; PENDAS, C.; QUINCKE, M.; VÁZQUEZ, D.; RODRIGUEZ, M. Fusariosis de la espiga en trigo y micotoxinas asociadas: contribuyendo a reducir su riesgo. Cultivos. Revista INIA Uruguay, Diciembre 2023, no.75 p.54-58. (Revista INIA; 75).| Tipo: Artículos en Revistas Agropecuarias |
| Biblioteca(s): INIA Las Brujas. |
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| 47. | | ZARBÁ, L.; PIQUER-RODRÍGUEZ, M.; BOILLAT, S.; LEVERS, C.; GASPARRI, I.; AIDE, T. M.; ÁLVAREZ-BERRÍOS, N. L.; ANDERSON, L. O.; ARAOZ, E.; ARIMA, E.; BATISTELLA, M.; CALDERÓN-LOOR, M.; ECHEVERRÍA, C.; GONZALEZ-ROGLICH, M.; JOBBÁGY, E. G.; MATHEZ-STIEFEL, S.-L.; RAMIREZ-REYES, C-; PACHECHO, A.; VALLEJOS, M.; YOUNG, K. R.; GRAU, R. Mapping and characterizing social-ecological land systems of South America. Ecology and Society, 2022, Volume 27, Issue 2, Article number 27. OPEN ACCESS. doi: https://doi.org/10.5751/ES-13066-270227 Article: Gold Open Access, Green Open Access. -- Erratum: On 6 June 2022 the abstract was edited. See online for more detail: https://ecologyandsociety.org/vol27/iss2/art27/#dataarchive_stmt --
LICENSE: Published under license by The...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
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